FastQCFastQC Report
Wed 8 May 2024
EGAF00007963643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453121
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68361.5086478004771353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23260.513328669384116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16890.3727481180523524No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14580.3217683576792954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10390.2292985758770836No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9900.21848468731310178No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9260.20436042469892146No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9200.20303627507884206No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9030.19928451782195042No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8180.18052573153749218No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT6680.14742199103550707No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.1410219345384566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6190.13660810247152527No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6080.13418049483471303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.1330770368179802No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6000.13241496200794048No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5640.12447006428746406No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5620.1240286810807709No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5520.12182176504730526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.11851139099710672No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4720.10416643677957985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4610.10173882914276759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)