FastQCFastQC Report
Wed 8 May 2024
EGAF00007963644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476514
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10500.22035029401024944No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9770.20503070214096544No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9440.19810540718635758No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8240.1729225164423291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)