FastQCFastQC Report
Wed 8 May 2024
EGAF00007963655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455677
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68071.493821281302326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6900.15142304746563903No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6790.14900905685386798No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6770.1485701494699096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5540.12157734535646961No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5250.11521318828907319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)