FastQCFastQC Report
Wed 8 May 2024
EGAF00007963657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497133
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34100.6859331406283631No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8150.16394003214431552No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7460.15006044660080903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7060.14201431005384876No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6820.13718662812567262No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5730.11526090603520586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)