FastQCFastQC Report
Wed 8 May 2024
EGAF00007963659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464413
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70461.5171840581551335No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7300.15718767562492866No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7070.15223518721482818No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6220.13393251265576114No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5610.12079765208984243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5190.11175397760183284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)