FastQCFastQC Report
Wed 8 May 2024
EGAF00007963668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477022
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23470.4920108506525905No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21470.4500840632088247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12610.2643483948329427No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11070.23206476850124313No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG7360.15429057779305777No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6530.136890961003895No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6390.13395608588283142No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5680.11907207634029458No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5420.11362159397260503No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5120.10733257585604017No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4940.10355916498610127No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4940.10355916498610127No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC4910.1029302631744448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)