FastQCFastQC Report
Wed 8 May 2024
EGAF00007963669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477022
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52471.099949268587193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32020.6712478669746889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12560.26330022514684853No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11860.24862584954153058No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC8350.17504433757772178No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6660.13961620218773976No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6050.12682853201739125No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5760.1207491478380452No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5530.11592756728201215No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5380.11278305822372972No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5160.1081711116049155No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4890.10251099530000712No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC4860.10188209348835064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)