FastQCFastQC Report
Wed 8 May 2024
EGAF00007963670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444003
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21400.4819787253689727No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19160.431528615797641No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.26891710191147356No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9870.22229579529868043No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6260.1409900383555967No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.13423332725229334No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5700.12837751096276379No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4970.11193618061139227No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4930.11103528579761848No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC4790.10788215394941025No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4720.10630558802530614No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4690.1056299169149758No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4490.1011254428461069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)