FastQCFastQC Report
Wed 8 May 2024
EGAF00007963671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444003
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66391.4952601671610328No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46811.0542721558187669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11800.26576397006326535No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10340.23288130936052232No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC7170.1614853953689502No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.1380621302108319No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5570.12544960281799897No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4930.11103528579761848No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4930.11103528579761848No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC4760.10720648283907991No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4620.10405335099087168No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4540.10225156136332414No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4460.10044977173577657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)