FastQCFastQC Report
Wed 8 May 2024
EGAF00007963672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481741
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23340.4844927045860743No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20490.42533228436026826No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13520.2806487303343498No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11290.23435829626292964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6640.1378334001050357No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6630.13762581968319076No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6630.13762581968319076No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5570.11562229496762783No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5490.11396165159286836No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5400.11209342779626398No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5260.10918730189043489No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5130.10648875640645077No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC5020.10420537176615649No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4930.10233714796955211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)