FastQCFastQC Report
Wed 8 May 2024
EGAF00007963673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481741
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50861.0557540255033306No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33490.6951868327586815No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13530.2808563107561947No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12290.255116338447423No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC7570.15713837933661448No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.14343807149484888No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6360.13202114829337755No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5610.11645261665500757No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5530.11479197328024811No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5260.10918730189043489No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5200.1079418193593653No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5110.10607359556276091No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC5040.10462053260984637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)