FastQCFastQC Report
Wed 8 May 2024
EGAF00007963674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450980
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22770.50490043904386No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20080.4452525610891836No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11520.2554437003858264No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10130.22462193445385603No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.14390882079027895No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6170.1368131624462282No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5860.12993924342542906No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5090.11286531553505699No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5060.11220009756530223No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC4880.10820878974677368No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4860.10776531110027053No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4550.10089139207947137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)