FastQCFastQC Report
Wed 8 May 2024
EGAF00007963675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450980
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68271.5138143598385738No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49901.1064792230254112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11460.25411326444631693No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10520.2332697680606679No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC6940.1538870903366003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.14457403876003372No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5630.1248392389906426No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5170.11463923012106968No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5140.11397401215131492No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4990.11064792230254114No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC4880.10820878974677368No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4790.10621313583750941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)