FastQCFastQC Report
Wed 8 May 2024
EGAF00007963677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494623
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31950.6459465087551529No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30040.6073312401566446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15270.30871997460692285No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13980.2826395052393439No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8110.1639632609078025No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7360.14880019732200078No Hit
TTCCAAGCAGCTCGTGCGTCCGGTGATATCG6880.1390958366270877No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6370.12878495338874255No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6130.12393277304128598No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5760.11645232833895713No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA5190.10492840001374786No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5140.10391752910802773No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5140.10391752910802773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)