FastQCFastQC Report
Wed 8 May 2024
EGAF00007963679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458707
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67791.4778496949032824No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26130.5696446751412122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13980.30476971138439135No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12710.2770831925390282No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8010.17462127240264483No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6690.14584473313029886No Hit
TTCCAAGCAGCTCGTGCGTCCGGTGATATCG6470.14104864325157454No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5860.12775039404238436No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5680.12382632050524628No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4970.10834803044209049No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4830.10529597324653864No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4800.10464196099034895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4710.1026799242217799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)