FastQCFastQC Report
Wed 8 May 2024
EGAF00007963681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498615
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34060.6830921652978751No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28790.5773993963278281No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15600.3128666405944466No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14390.28859942039449277No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8630.1730794300211586No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7990.1602438755352326No Hit
TTCCAAGCAGCTCGTGCGTCCGGTGATATCG7300.14640554335509362No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6340.1271522116262046No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6050.12133610099976937No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5570.11170943513532484No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5400.10829999097500076No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5330.10689610220310258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)