FastQCFastQC Report
Wed 8 May 2024
EGAF00007963683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465854
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69471.4912397446410248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29160.6259471851696026No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14200.3048165305009724No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13060.2803453442494859No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.16421453931918584No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6970.14961769137970266No Hit
TTCCAAGCAGCTCGTGCGTCCGGTGATATCG6960.14940303185118084No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5600.12020933597221446No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5530.1187067192725618No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5230.11226693341690744No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5020.1077590833179494No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4730.10153395699081687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)