FastQCFastQC Report
Wed 8 May 2024
EGAF00007963684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484719
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC46550.9603502235315718No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT46460.9584934776643788No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC42010.8666877097864949No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG29050.5993163049106802No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24310.5015276892385073No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15240.3144089668447079No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG14980.30904503433948327No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14430.2976982540399695No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13300.2743857781518777No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12360.25499309909452694No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12030.2481850309148187No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10040.20713031674021443No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT9500.1959898415370555No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9460.1951646211516363No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9190.18959438355005684No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8500.17535933190157596No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8440.1741215013234472No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8430.1739151962270924No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.15534773755516082No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6920.1427631266775183No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6870.14173160119574432No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6770.1396685502321964No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.13698658397958405No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6470.1334793973415525No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6170.12729024445090867No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC6170.12729024445090867No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.12522719348736072No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5420.11181736222429903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)