FastQCFastQC Report
Wed 8 May 2024
EGAF00007963685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484719
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA104022.1459856122825802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA59271.2227703060948714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA55831.151801352948822No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32700.6746176650801804No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18570.38310856393085474No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG15740.32472422166244774No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15330.3162657127119011No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14060.2900649654748421No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13820.285113643162327No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13370.27582991382636124No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12880.2657209641049763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12470.2572624551544297No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10180.21001858808918158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9480.19557723134434588No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9380.19351418038079793No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9170.18918177335734723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8360.17247106055260883No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8060.16628190766196496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7960.16421885669841702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7600.15679187322964439No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7290.15039641524264574No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6960.1435883470629375No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6790.14008116042490598No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC6260.1291469903181018No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6210.12811546483632785No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4920.10150210740655927No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.10150210740655927No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4890.10088319211749489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)