FastQCFastQC Report
Wed 8 May 2024
EGAF00007963687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448986
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA96362.146169368309925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68551.526773663321351No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA53361.1884557647677212No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA50841.132329293118271No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15740.35056772371521605No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG14030.31248190366737494No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13900.3095864904473636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12290.27372791133799274No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12060.26860525717951117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11970.26660074033488795No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11780.2623689825517945No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11180.24900553692097302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.20802430365312058No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8460.18842458339458246No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8190.1824110328607128No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8160.18174286057917174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7570.16860213904219729No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7100.15813410663138716No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7010.15612958978676394No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.14900241878365916No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6390.14232069596824845No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6190.13786621409130798No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6100.13586169724668476No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5750.1280663539620389No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5650.12583911302356865No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4640.10334397954501921No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4490.10000311813731384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)