FastQCFastQC Report
Wed 8 May 2024
EGAF00007963688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487166
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT48290.9912432312599812No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC46360.9516263450240781No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC41580.8535078392170224No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG28530.585632002233325No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24450.5018823152683068No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15290.31385605727821725No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG15200.31200863771281245No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG15200.31200863771281245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13130.2695179877085018No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12720.2611019652438799No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12030.246938415242443No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10910.22394830509518318No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8930.18330507465627732No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8890.18248399929387518No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8590.17632593407585917No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8480.17406797682925326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8400.172425826104449No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8260.16955206233604153No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.1545674369722025No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7080.14533033914517843No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6720.1379406608835592No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6620.13588797247755385No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6490.13321947754974692No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6410.13157732682494264No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6040.12398237972272286No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5950.12213496015731805No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC5910.1213138847949159No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5430.11146098044609025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)