FastQCFastQC Report
Wed 8 May 2024
EGAF00007963689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487166
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA105932.1744128284814623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA58541.201643792875529No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA55431.1378051834487628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35960.7381467507995222No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18120.3719471391681686No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG15970.3278143384390536No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15010.3081085297414023No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14940.3066716478571986No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13790.2830657311881371No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13520.27752347249192266No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12990.26664422394009435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12360.25371228698226067No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10010.20547410944113503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9570.19644228045471154No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9340.19172109712089924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8460.1736574391480522No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8300.17037313769844364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8210.16852571813303882No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7630.15662012537820785No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7620.1564148565376073No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7220.14820410291358593No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7060.14491980146397737No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7020.14409872610157523No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.12685614349113034No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5880.1206980782731143No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5050.10366076450326993No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5050.10366076450326993No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4990.10242915145966672No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4960.10181334493786513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)