FastQCFastQC Report
Wed 8 May 2024
EGAF00007963691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456845
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA98952.1659424969081416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71871.5731812759250947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA53401.1688866026770568No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA51601.1294859306767067No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16490.3609539340476529No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG14490.3171754096028193No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13880.30382295964714506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13150.28784379822478084No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12890.2821525900469525No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11900.26048222044675984No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11790.258074401602294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11580.25347765653558646No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.21495255502413294No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8810.19284440017949195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.18343201742385273No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8200.1794919502238177No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8180.17905416497936938No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7740.16942288960150598No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7520.16460725191257428No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7300.1597916142236426No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6930.15169258720134837No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6200.13571342577898413No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5980.13089778809005242No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5870.1284899692455866No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5710.12498768728999989No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4820.10550624391204894No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4700.10287953244535893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)