FastQCFastQC Report
Wed 8 May 2024
EGAF00007963693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482737
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34300.7105318216751565No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25980.5381812456886462No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13130.2719907527287115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12680.2626689066717488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11640.24112508467343505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11240.2328389992894682No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7410.1534997317379857No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7270.1505996018535973No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6850.1418992122004321No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.13527034389325865No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6110.12656995424009346No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5980.12387697649030424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5780.11973393379832083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4880.10109024168439545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4870.10088308954979627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)