FastQCFastQC Report
Wed 8 May 2024
EGAF00007963697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487155
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36520.7496587328468353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26060.5349426773819421No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13090.2687029795444982No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12370.25392328930217284No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.23360121521897548No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10710.2198478923545894No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7610.1562131149223553No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7420.15231291888618612No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.14697580852090197No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6520.13383830608327946No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6310.12952756309593455No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5950.1221377179747719No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5840.11987970974330553No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5160.10592111340333159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)