FastQCFastQC Report
Wed 8 May 2024
EGAF00007963699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455136
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG73181.6078710539267385No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25760.5659846727132111No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12830.2818937636223019No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11440.251353441608662No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.24234514518737255No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.22301026506362934No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6810.14962560641214934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6770.14874674822470646No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5980.1313892990227097No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5920.1300710117415454No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5580.12260071714828095No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5390.11842614075792732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5220.11469099346129508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4980.10941784433663784No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4610.10128840610279125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)