FastQCFastQC Report
Wed 8 May 2024
EGAF00007963706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471747
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT35350.7493423381600731No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT26580.5634376053265839No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24870.5271893620945125No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22980.48712551431169676No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20870.44239814985574893No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16560.35103561866848115No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16070.3406486951692327No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14970.3173311118035727No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14690.3113957269468592No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14690.3113957269468592No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13160.2789630882655322No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11520.2441986912476391No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG11390.24144297684987928No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9860.2090103381685522No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9850.20879836013795533No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8880.18823649117005514No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG8610.1825130843439386No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8090.17149022675289932No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7880.16703868811036424No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7840.1661907759879766No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7330.15537989642753425No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7310.15495594036634044No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT7210.15283616006037135No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7150.1515642918767899No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6520.13820967594918462No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6290.13333418124545574No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC6260.132698247153665No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6040.128034730480533No Hit
TGGTGCAGGAGTTTCCGGAGCAGGTGCTTCCGGGATCTGCGGGG5660.11997956531785046No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5500.11658791682829991No Hit
GGATGGCGGAGTCAGGCCTTTTTCCTTGGCGTAAGCCTGTGCCG5300.11234835621636173No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5300.11234835621636173No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5280.11192440015516793No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5080.10768483954322974No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5020.10641297135964829No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5000.10598901529845448No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4980.10556505923726064No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4900.10386923499248538No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4810.1019614327171132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)