FastQCFastQC Report
Wed 8 May 2024
EGAF00007963708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479388
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC17260.3600423873772393No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16910.3527414119669245No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13780.2874498318689663No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12010.25052775622251705No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8820.18398458033993342No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8690.18127278947324504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8660.18064699158093236No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7980.16646223935517784No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT7570.15790966816023763No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT7500.15644947307817467No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT7260.1514430899396731No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6950.14497651171910853No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6570.13704973841648102No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6560.13684113911904344No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6240.13016596160104132No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6210.12954016370872862No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG5460.11389521640091116No Hit
ATCTTCAATACGCTGCAGTTTCACCACGTTAGAGTCGCCTGCCG5210.108680233964972No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4980.10388245012390798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)