FastQCFastQC Report
Wed 8 May 2024
EGAF00007963709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479388
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32930.6869174864619055No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31270.6522900030872696No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG17740.37005515365424246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17140.35753919580798854No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9070.18919956277587258No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA8830.18419317963737097No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8660.18064699158093236No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8590.1791867964988694No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8550.17835239930911911No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA8320.17355461546805512No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8090.1687568316269911No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.16020426043205088No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA7670.1599956611346133No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7370.15373768221148632No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6890.14372491593448314No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6870.143307717339608No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG6710.13997012858060695No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6650.13871853279598156No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC5670.11827580164710004No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5340.11139202483166036No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5280.11014042904703497No Hit
GTTTCCGTTGATTCCGTCGACGCTGCTGCAG5040.10513404590853338No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5010.10450824801622068No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG4840.10096205995978205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)