FastQCFastQC Report
Wed 8 May 2024
EGAF00007963710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446138
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16150.36199561570635097No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC16150.36199561570635097No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12130.2718889670909001No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10900.24431902236527714No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8760.19635180146053466No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8250.18492036096454462No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8170.18312719382791873No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7280.16317820943295572No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6600.1479362887716357No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT6460.1447982462825404No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT6420.14390166271422744No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6290.14098776611721037No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6230.13964289076474096No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5880.1317977845420027No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5780.12955632562122033No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5560.12462511599549916No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5020.11252123782327442No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4620.10355540214014498No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG4610.10333125624806674No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4590.10288296446391026No Hit
ATCTTCAATACGCTGCAGTTTCACCACGTTAGAGTCGCCTGCCG4520.1013139432193626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)