FastQCFastQC Report
Wed 8 May 2024
EGAF00007963711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446138
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68391.5329337559230554No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27270.6112458476973492No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG16480.3693924301449327No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16100.36087488624595976No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8580.19231717540312637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8350.18716181988532696No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8040.18021329723090165No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7710.17281648279231987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7640.17124746154777223No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA7440.1667645437062075No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7180.16093675051217338No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA7020.1573504162389216No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA6830.15309164428943509No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG6510.14591897574293156No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6330.1418843496855233No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6260.14031532844097566No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6220.1394187448726627No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5840.13090120097368976No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5250.11767659334107385No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5060.11341782139158735No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC4770.10691759052131851No Hit
GTTTCCGTTGATTCCGTCGACGCTGCTGCAG4590.10288296446391026No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4580.10265881857183204No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4570.1024346726797538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)