FastQCFastQC Report
Wed 8 May 2024
EGAF00007963712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483406
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17200.3558085749866572No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC16500.34132799344650255No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14560.3011960960352168No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12010.24844540613893912No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8940.18493771281283228No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8620.17831801839447586No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8610.17811115294390223No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT8090.16735414951407304No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7690.15907953149112752No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT7240.14977058621531383No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT6980.14439208450039925No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6980.14439208450039925No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6700.13859985188433738No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6570.1359106010268801No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6020.12453300124533001No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5960.12329180854188818No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5620.11625838322238449No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG5490.1135691323649272No Hit
ATCTTCAATACGCTGCAGTTTCACCACGTTAGAGTCGCCTGCCG4900.10136407078108257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)