FastQCFastQC Report
Wed 8 May 2024
EGAF00007963713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483406
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36370.7523696437363211No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30820.637559318667952No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG17260.357049767690099No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17210.3560154404372308No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8810.18224846195537497No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8750.18100726925193317No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA8610.17811115294390223No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8600.1779042874933286No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8550.1768699602404604No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA8490.1756287675370186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8460.17500817118529766No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8210.1698365349209567No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA7620.15763147333711205No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6950.14377148814867835No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6900.14273716089581015No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6690.13839298643376377No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG6320.13073896476253913No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6290.13011836841081825No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5900.12205061583844637No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC5630.11646524867295813No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5270.10901809245230716No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5230.10819063065001261No Hit
ATGGTAGTTCAGCACAATATGCAGGCTATGA4890.10115720533050894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)