FastQCFastQC Report
Wed 8 May 2024
EGAF00007963715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453300
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71991.5881314802559012No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29480.6503419369071255No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16450.3628943304654754No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG16390.3615707037282153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8970.19788219722038386No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8480.1870725788660931No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8180.18045444517979262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8140.17957202735495256No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA7630.16832120008824178No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7570.1669975733509817No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA7410.16346790205162143No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA7250.15993823075226118No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7200.1588352084712111No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6890.15199647032870064No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6570.14493712772998016No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6270.13831899404367967No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG6140.13545113611294948No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5960.1314802559011692No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5400.11912640635340835No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5140.11339069049194794No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC4990.11008162364879771No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4670.10302228105007721No Hit

[OK]Adapter Content

Adapter graph