FastQCFastQC Report
Wed 8 May 2024
EGAF00007963716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493822
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20860.42241941428287927No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14930.3023356594076408No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12780.25879770443601136No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT8190.16584923312448616No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7670.15531912308483622No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7100.14377650246445076No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6770.137093932631596No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6400.1296013543341528No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6180.12514630777891628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)