FastQCFastQC Report
Wed 8 May 2024
EGAF00007963717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493822
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32850.6652194515432687No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30890.6255290367784343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21120.4276844693027042No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16030.32461089218382333No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG8950.1812393939516668No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7580.1534966040395122No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6850.1387139495607729No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6420.13000635856644702No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6170.12494380566276918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.12352629084973939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)