FastQCFastQC Report
Wed 8 May 2024
EGAF00007963719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459233
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65551.4273800010016702No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28670.62430182499951No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18390.4004503160704914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15100.3288091230377608No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG8430.18356694749723995No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6250.13609649132357649No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6130.13348343869016382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6130.13348343869016382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5530.12041817552310048No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5380.11715185973133464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)