FastQCFastQC Report
Wed 31 May 2023
EGAF00007963720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496639
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21370.4302924256854576No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14650.2949828748849768No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12680.25531623573662154No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT8710.17537889694526607No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7870.15846520309520598No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6900.13893391376835085No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6820.13732308578263086No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6360.1280608248647408No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5570.11215389850575569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)