FastQCFastQC Report
Wed 8 May 2024
EGAF00007963721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496639
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33050.6654733116005791No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32360.651579920223744No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21780.43854791911227275No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16050.323172364635077No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG9520.19168853030068117No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7310.1471894071951659No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6780.13651767178977084No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6330.1274567643700958No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5720.1151742009789807No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5660.1139660799896907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)