FastQCFastQC Report
Wed 8 May 2024
EGAF00007963723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466963
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69751.4936943612234803No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31530.6752140961917754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18640.399175095243092No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14820.3173698986857631No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG8850.18952251034878567No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6700.14348031856913718No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6350.1359850780468688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5670.12142289646074743No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5650.12099459700233209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5070.10857391270828738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)