FastQCFastQC Report
Wed 8 May 2024
EGAF00007963725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533051
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33880.6355864635841598No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20000.37519862076987004No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG11700.219491193150374No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11100.20823523452727788No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9330.1750301565891444No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA9290.17427975934760465No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8410.15777102003373036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7320.13732269520177243No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7020.13169471589022438No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6070.11387278140365556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)