FastQCFastQC Report
Wed 8 May 2024
EGAF00007963727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494145
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71681.450586366349958No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18100.366289247083346No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10490.21228586750852482No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10060.20358396826842323No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA8330.16857400155824706No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8280.16756215280939804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7650.15481285857390037No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6860.13882564834208583No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6170.12486213560796931No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5300.10725596737799634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)