FastQCFastQC Report
Wed 8 May 2024
EGAF00007963728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535515
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG11250.21007814907145458No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10450.1951392584708178No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10340.19308516101323026No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8890.1660084217995761No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCAGCG8380.15648487904167016No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7880.14714807241627217No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6720.12548668104534888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6130.11446924922737926No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5650.10550591486699719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)