FastQCFastQC Report
Wed 8 May 2024
EGAF00007963729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535515
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35570.6642204233308124No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19600.36600281971560084No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11260.21026488520396255No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG11180.20877099614389888No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9060.16918293605221144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8720.1628339075469408No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA8450.15779203196922587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7260.1355704322007787No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6770.12642036170788867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6210.11596313828744294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)