FastQCFastQC Report
Wed 8 May 2024
EGAF00007963731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503604
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG75251.4942295930929856No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17420.34590670447415034No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG11060.21961700065924813No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10950.21743274477565708No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA8180.16242921025249998No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7820.15528073645165646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7610.1511107934011644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6970.13840239553299813No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6300.1250982915147616No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5790.11497128696356662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)