FastQCFastQC Report
Wed 8 May 2024
EGAF00007963740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482326
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21660.4490738629060014No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17120.35494665433752276No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14290.29627264547214954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12910.2676612913257838No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT12330.2556362294381808No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9510.19716954922604216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8720.18079058562051392No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8440.17498538332994695No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6240.12937307961834943No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6230.12916575096511487No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6090.1262631498198314No Hit
ATCGTTGATGTCGGTGGCGTCAATGATACGGAACTGATTGTTGT5790.12004329022279538No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5560.11527473119840109No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5400.11195747274664854No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG4900.10159104008492183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)