FastQCFastQC Report
Wed 8 May 2024
EGAF00007963741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482326
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36670.7602741714110374No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27490.5699464677417349No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22210.46047693883390073No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20090.41652326434817943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13630.28258895435867026No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA13200.2736738222695853No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8900.18452250137873555No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.17996127100757578No Hit
ACCCGTGAAAACGATGGCAAACCACGTCGCA8070.1673142231602692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7990.16565559393439291No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7530.15611847588560435No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7020.1455447145706431No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6620.1372515684412617No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6050.12543383520689327No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5400.11195747274664854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)