FastQCFastQC Report
Wed 8 May 2024
EGAF00007963742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448084
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19650.4385338463323841No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15280.341007489667116No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13220.2950339668455022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11880.26512885976736505No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11850.2644593424447202No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8480.1892502298676141No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7790.1738513314467823No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7640.170503744833558No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5950.13278760232456416No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5920.13211808500191927No Hit
ATCGTTGATGTCGGTGGCGTCAATGATACGGAACTGATTGTTGT5690.12698511886164202No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5620.12542291177547069No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4910.10957766847287563No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4820.10756911650494105No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4580.10221297792378214No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4570.10198980548290053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)