FastQCFastQC Report
Wed 8 May 2024
EGAF00007963743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448084
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60711.3548798885923177No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32920.7346836753822944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20110.4487997786129386No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17830.3979164620919292No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12610.28142044795172333No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12000.2678069290579445No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8370.1867953330179163No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8130.1814391944367574No Hit
ACCCGTGAAAACGATGGCAAACCACGTCGCA7810.17429767632854554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7580.16916471018826829No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6750.15064139759509376No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6150.13725105114219655No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6030.1345729818516171No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.11203256532257345No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5010.11180939288169182No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4780.10667642674141455No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4740.10578373697788808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)