FastQCFastQC Report
Wed 8 May 2024
EGAF00007963745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454084
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61591.3563569735995984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34760.765497132689106No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19910.4384651297997727No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18390.40499114701244704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13010.2865108658309916No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12160.2677918622986056No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8200.18058332819478334No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8190.18036310462381408No Hit
ACCCGTGAAAACGATGGCAAACCACGTCGCA7980.17573840963345988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7320.16120365394948952No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6950.15305538182362735No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6710.1477700161203654No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6280.13830040256868772No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5010.11033200905559325No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4980.1096713383426855No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4770.10504664335233128No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4550.10020172479100783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)